Variant report

Variant	rs10179315
Chromosome Location	chr2:210500689-210500690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10174385	0.92[EUR][1000 genomes]
rs10203283	0.85[EUR][1000 genomes]
rs10208961	0.85[EUR][1000 genomes]
rs1039826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10497931	0.92[EUR][1000 genomes]
rs12694187	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12988159	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13000863	0.92[EUR][1000 genomes]
rs13382265	0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13412699	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13423655	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13432941	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1396778	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509467	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843236	0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1828281	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1949041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1962197	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967262	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063292	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2663644	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2663656	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2710476	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28517694	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60751322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6435533	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6752060	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7566048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7603837	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9288411	1.00[EUR][1000 genomes]
rs992991	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210496200-210506800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:210496200-210507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210496400-210502200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210498800-210501200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210499000-210500800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210499600-210500800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:210499600-210501800	Enhancers	Brain Germinal Matrix	brain
9	chr2:210499800-210501000	Enhancers	Fetal Brain Female	brain
10	chr2:210499800-210501400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:210500000-210501200	Enhancers	Brain Angular Gyrus	brain
12	chr2:210500200-210501200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210500200-210501200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:210500200-210501200	Enhancers	Fetal Brain Male	brain
15	chr2:210500400-210501000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:210500400-210501200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:210500400-210501200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:210500400-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:210500400-210501200	Enhancers	Brain Anterior Caudate	brain
20	chr2:210500400-210501200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr2:210500600-210501000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr2:210500600-210501200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr2:210500600-210501200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:210500600-210501200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr2:210500600-210501200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:210500600-210501200	Enhancers	Brain Substantia Nigra	brain
27	chr2:210500600-210501800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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