Variant report

Variant	rs10180834
Chromosome Location	chr2:56060038-56060039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1346783	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1960050	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2115876	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2115878	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4352264	0.90[EUR][1000 genomes]
rs4672074	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4672075	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6545523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6545524	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6708796	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6749785	0.85[EUR][1000 genomes]
rs6751403	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7426380	0.85[EUR][1000 genomes]
rs7572523	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56055000-56066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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