Variant report

Variant	rs1018141
Chromosome Location	chr6:54511674-54511675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11967833	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198936	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12208090	0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs12211545	0.86[EUR][1000 genomes]
rs12215844	0.81[EUR][1000 genomes]
rs12527497	0.88[EUR][1000 genomes]
rs12529276	0.88[EUR][1000 genomes]
rs1395632	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1395635	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34970714	0.88[EUR][1000 genomes]
rs4715469	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs540890	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903280	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6906715	0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs7740110	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7746312	0.81[CHB][hapmap]
rs7753256	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296764	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs9474944	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54507000-54511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:54509600-54512400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:54510400-54512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:54511000-54511800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:54511400-54511800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:54511400-54512600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:54511600-54511800	Enhancers	Osteobl	bone
8	chr6:54511600-54512200	Enhancers	Brain Anterior Caudate	brain
9	chr6:54511600-54512400	Enhancers	Aorta	Aorta
10	chr6:54511600-54513000	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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