Variant report

Variant	rs10184200
Chromosome Location	chr2:134561641-134561642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134552534..134554814-chr2:134560067..134563066,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10496713	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884849	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11888079	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12691846	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993296	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12995146	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12996062	0.82[ASN][1000 genomes]
rs12996450	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996471	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002440	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006611	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13011121	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13013221	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13015979	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13017617	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032020	0.82[ASN][1000 genomes]
rs13032581	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13033059	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13036190	0.82[ASN][1000 genomes]
rs1374405	0.82[ASN][1000 genomes]
rs1446752	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1562348	0.82[ASN][1000 genomes]
rs1867897	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35961497	0.82[ASN][1000 genomes]
rs4536693	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62166124	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568496	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9917166	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10184200	ZNF462	trans	brain	seeQTL
rs10184200	ZNF281	trans	brain	seeQTL
rs10184200	MZT2B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134560600-134564400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:134561600-134561800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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