Variant report

Variant	rs10185216
Chromosome Location	chr2:210230545-210230546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210229068..210231553-chr2:210286717..210289025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078018	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10153809	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10174291	0.85[ASN][1000 genomes]
rs10182475	1.00[CEU][hapmap]
rs10192555	0.93[CEU][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10200389	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10200539	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10201740	0.87[EUR][1000 genomes]
rs10210266	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10932297	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10932301	0.85[ASN][1000 genomes]
rs11678209	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11889366	0.82[ASN][1000 genomes]
rs11900413	0.83[ASN][1000 genomes]
rs11904626	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12613105	0.86[ASN][1000 genomes]
rs12613165	0.85[ASN][1000 genomes]
rs12614926	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12614974	0.84[ASN][1000 genomes]
rs12617330	0.84[ASN][1000 genomes]
rs12619841	0.86[ASN][1000 genomes]
rs12621534	0.84[ASN][1000 genomes]
rs12622130	0.84[ASN][1000 genomes]
rs12622639	0.83[ASN][1000 genomes]
rs12623404	0.81[ASN][1000 genomes]
rs12623474	0.86[ASN][1000 genomes]
rs12623555	0.83[ASN][1000 genomes]
rs12694180	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13005529	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13020975	0.89[EUR][1000 genomes]
rs13023264	0.82[ASN][1000 genomes]
rs13024490	0.84[ASN][1000 genomes]
rs13028173	0.84[ASN][1000 genomes]
rs13028553	0.84[ASN][1000 genomes]
rs13033819	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13034750	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13391766	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13391768	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1374333	0.84[ASN][1000 genomes]
rs1446593	0.85[ASN][1000 genomes]
rs1446594	0.85[ASN][1000 genomes]
rs1446596	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16842875	0.84[ASN][1000 genomes]
rs16842884	0.84[ASN][1000 genomes]
rs17236116	0.89[CEU][hapmap];0.85[ASN][1000 genomes]
rs17725929	0.86[ASN][1000 genomes]
rs17726115	0.86[ASN][1000 genomes]
rs2028893	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2123701	0.90[CEU][hapmap];0.85[ASN][1000 genomes]
rs28556312	0.85[ASN][1000 genomes]
rs28558587	0.80[ASN][1000 genomes]
rs28610349	0.85[ASN][1000 genomes]
rs35424736	0.98[ASN][1000 genomes]
rs4417658	0.92[CEU][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs57091157	0.82[ASN][1000 genomes]
rs57237067	0.86[ASN][1000 genomes]
rs57340402	0.83[ASN][1000 genomes]
rs57477937	0.86[ASN][1000 genomes]
rs58527022	0.83[ASN][1000 genomes]
rs59168245	0.86[ASN][1000 genomes]
rs59222491	0.84[ASN][1000 genomes]
rs60124019	0.86[ASN][1000 genomes]
rs60358187	0.81[ASN][1000 genomes]
rs61002714	0.86[ASN][1000 genomes]
rs6435528	0.89[CEU][hapmap];0.85[ASN][1000 genomes]
rs6435529	0.85[ASN][1000 genomes]
rs66484761	0.86[ASN][1000 genomes]
rs66889373	0.85[ASN][1000 genomes]
rs6711968	0.85[ASN][1000 genomes]
rs6726105	0.93[CEU][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6733750	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6746759	0.85[ASN][1000 genomes]
rs6751612	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6761283	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67685639	0.86[ASN][1000 genomes]
rs72492734	0.98[ASN][1000 genomes]
rs72995681	0.85[ASN][1000 genomes]
rs73056336	0.83[ASN][1000 genomes]
rs73056341	0.83[ASN][1000 genomes]
rs73056354	0.84[ASN][1000 genomes]
rs73056366	0.85[ASN][1000 genomes]
rs73060554	0.86[ASN][1000 genomes]
rs73060555	0.86[ASN][1000 genomes]
rs73060558	0.86[ASN][1000 genomes]
rs73060559	0.86[ASN][1000 genomes]
rs73060566	0.98[ASN][1000 genomes]
rs7557610	0.84[ASN][1000 genomes]
rs7563521	0.86[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7568431	0.85[ASN][1000 genomes]
rs7568858	0.84[ASN][1000 genomes]
rs7569773	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7575409	0.84[ASN][1000 genomes]
rs7577392	0.83[ASN][1000 genomes]
rs7578275	0.86[ASN][1000 genomes]
rs7580883	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7592166	0.86[ASN][1000 genomes]
rs7592320	0.84[ASN][1000 genomes]
rs7593008	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7594842	0.85[ASN][1000 genomes]
rs7595924	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7602104	0.84[ASN][1000 genomes]
rs7608377	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608854	0.85[ASN][1000 genomes]
rs9288407	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs992028	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs993784	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9967799	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875764	chr2:210195717-210240990	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1014900	chr2:210205050-210235562	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1006636	chr2:210207332-210235562	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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