Variant report

Variant	rs10185344
Chromosome Location	chr2:33571790-33571791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33571757..33573919-chr2:33583040..33585706,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10167082	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs10190501	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12328065	0.90[EUR][1000 genomes]
rs13386072	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13428115	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs3845775	0.92[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs6706620	0.81[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6709900	0.85[EUR][1000 genomes]
rs6736026	0.90[EUR][1000 genomes]
rs72861454	0.83[EUR][1000 genomes]
rs72861492	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv873791	chr2:33489975-33586776	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1012967	chr2:33533340-33638312	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv535627	chr2:33533340-33638312	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33529800-33609400	Weak transcription	Right Ventricle	heart
2	chr2:33540800-33580800	Weak transcription	Placenta	Placenta
3	chr2:33542000-33572200	Weak transcription	Liver	Liver
4	chr2:33547600-33579800	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:33547800-33581000	Weak transcription	Fetal Lung	lung
6	chr2:33548200-33588400	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:33549000-33588800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:33550600-33577600	Weak transcription	Fetal Stomach	stomach
9	chr2:33558400-33592200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:33561200-33572400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:33561600-33572600	Weak transcription	Gastric	stomach
12	chr2:33563000-33579600	Weak transcription	NHDF-Ad	bronchial
13	chr2:33563200-33577200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:33563200-33578200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:33564000-33582200	Weak transcription	Esophagus	oesophagus
16	chr2:33564200-33591600	Weak transcription	Psoas Muscle	Psoas
17	chr2:33565600-33580800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:33565800-33576600	Weak transcription	Ovary	ovary
19	chr2:33565800-33590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:33565800-33590400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:33566800-33581000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:33567600-33578000	Weak transcription	Left Ventricle	heart
23	chr2:33568000-33574400	Weak transcription	NHLF	lung
24	chr2:33568400-33580600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:33568800-33575200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:33569000-33572200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr2:33569000-33572600	Weak transcription	HUVEC	blood vessel
28	chr2:33569200-33572400	Weak transcription	NH-A	brain
29	chr2:33570400-33572400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:33570400-33572400	Weak transcription	Osteobl	bone
31	chr2:33570400-33580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:33570600-33572200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:33570600-33572400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:33570600-33572400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:33570600-33572600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:33570600-33574200	Weak transcription	Aorta	Aorta
37	chr2:33570600-33587400	Weak transcription	Fetal Heart	heart
38	chr2:33570800-33588400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr2:33571000-33572400	Weak transcription	Dnd41	blood
40	chr2:33571000-33590600	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:33571400-33579400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:33571400-33579800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:33571600-33591600	Weak transcription	Brain Substantia Nigra	brain

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