Variant report

Variant	rs10186560
Chromosome Location	chr2:182101001-182101002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10203988	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10209981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211135	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13020845	0.85[JPT][hapmap]
rs13428406	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867385	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16867386	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16867404	0.87[CEU][hapmap]
rs17455869	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182088400-182105400	Weak transcription	Dnd41	blood
2	chr2:182090200-182105600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:182090400-182103200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:182090600-182103200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:182091200-182103000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:182091800-182106000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:182092600-182106200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr2:182093600-182106200	Weak transcription	Fetal Thymus	thymus
9	chr2:182097800-182101600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:182099600-182102000	Enhancers	GM12878-XiMat	blood
11	chr2:182100000-182102000	Enhancers	Primary B cells from peripheral blood	blood
12	chr2:182100000-182106000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:182100600-182101200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:182100600-182102000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr2:182100800-182101200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:182100800-182101200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:182101000-182101400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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