Variant report

Variant	rs10186928
Chromosome Location	chr2:181919779-181919780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:181919631-181919908	IMR90	lung:	n/a	n/a
2	GATA3	chr2:181919697-181920192	SK-N-SH	brain:	n/a	n/a
3	GATA2	chr2:181919726-181919969	HUVEC	blood vessel:	n/a	n/a
4	JUN	chr2:181919620-181919916	HepG2	liver:	n/a	chr2:181919777-181919790
5	JUND	chr2:181919613-181919951	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181843278..181846706-chr2:181916134..181920332,4	K562	blood:

Variant related genes	Relation type
UBE2E3	TF binding region
ENSG00000236153	Chromatin interaction
ENSG00000170035	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10167039	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10172609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177379	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190282	1.00[YRI][hapmap]
rs10206321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs13396254	0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs13399193	0.85[ASN][1000 genomes]
rs13406482	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs13409312	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13418807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420090	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13420526	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13420661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13425162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13425730	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs13429008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077214	0.86[AFR][1000 genomes]
rs6706552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6721173	1.00[YRI][hapmap]
rs6722001	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6761219	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181902200-181926400	Weak transcription	HSMM	muscle
2	chr2:181902800-181934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:181903800-181934600	Weak transcription	NH-A	brain
4	chr2:181904400-181934000	Weak transcription	NHDF-Ad	bronchial
5	chr2:181904400-181945400	Weak transcription	Left Ventricle	heart
6	chr2:181911000-181928400	Weak transcription	Fetal Lung	lung
7	chr2:181911800-181940400	Weak transcription	Primary T cells from cord blood	blood
8	chr2:181912400-181941400	Weak transcription	Esophagus	oesophagus
9	chr2:181912600-181928400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:181913000-181922800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:181913800-181938400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:181915800-181928200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:181917000-181920400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:181917200-181928600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:181917200-181929000	Weak transcription	Primary B cells from cord blood	blood
16	chr2:181917200-181931000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:181917200-181934200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:181917400-181928200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:181917600-181920800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr2:181917600-181921000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr2:181917600-181928400	Weak transcription	K562	blood
22	chr2:181917600-181934400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:181917600-181936800	Weak transcription	NHLF	lung
24	chr2:181917600-181937600	Weak transcription	Fetal Thymus	thymus
25	chr2:181917800-181926400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:181917800-181930800	Weak transcription	GM12878-XiMat	blood
27	chr2:181917800-181934200	Weak transcription	Psoas Muscle	Psoas
28	chr2:181917800-181935600	Weak transcription	Liver	Liver
29	chr2:181918000-181922800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:181918000-181938200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:181918400-181920400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr2:181918800-181919800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:181918800-181919800	Enhancers	Stomach Mucosa	stomach
34	chr2:181918800-181919800	Enhancers	NHEK	skin
35	chr2:181919000-181920000	Enhancers	HMEC	breast
36	chr2:181919000-181920200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:181919200-181929600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr2:181919400-181919800	Enhancers	Adipose Nuclei	Adipose
39	chr2:181919400-181919800	Enhancers	Fetal Heart	heart
40	chr2:181919400-181920000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:181919600-181919800	Enhancers	Brain Substantia Nigra	brain
42	chr2:181919600-181920200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:181919600-181927400	Weak transcription	Osteobl	bone
44	chr2:181919600-181934400	Weak transcription	HUVEC	blood vessel

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