Variant report

Variant	rs10187899
Chromosome Location	chr2:37656687-37656688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11675003	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11675007	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11677182	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677544	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11677671	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11684584	1.00[ASN][1000 genomes]
rs11688569	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11690616	1.00[ASN][1000 genomes]
rs11694420	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694425	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11695993	1.00[ASN][1000 genomes]
rs13383093	1.00[ASN][1000 genomes]
rs17020628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17020652	1.00[ASN][1000 genomes]
rs17020654	1.00[ASN][1000 genomes]
rs17020657	1.00[ASN][1000 genomes]
rs17020741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390746	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670197	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670199	1.00[ASN][1000 genomes]
rs4670202	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670706	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670707	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4670710	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670712	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670715	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670716	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670718	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010298	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56049744	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58023647	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58400888	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58486146	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60243594	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60383893	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713585	1.00[ASN][1000 genomes]
rs6725241	1.00[ASN][1000 genomes]
rs6728425	1.00[ASN][1000 genomes]
rs6753813	1.00[ASN][1000 genomes]
rs73924639	1.00[ASN][1000 genomes]
rs73924652	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924654	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950296	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37654800-37659000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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