Variant report

Variant	rs10189196
Chromosome Location	chr2:180449096-180449097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10048645	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10189808	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11683510	0.91[EUR][1000 genomes]
rs11695089	0.91[EUR][1000 genomes]
rs11885342	0.81[ASN][1000 genomes]
rs12615265	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12615343	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12693195	0.87[EUR][1000 genomes]
rs12693196	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12986652	0.84[EUR][1000 genomes]
rs12987486	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12991282	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13000199	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13001067	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13014868	0.84[EUR][1000 genomes]
rs13026689	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13028216	0.84[EUR][1000 genomes]
rs13029050	0.84[EUR][1000 genomes]
rs13411084	0.92[ASN][1000 genomes]
rs13411180	0.92[ASN][1000 genomes]
rs1515304	0.87[EUR][1000 genomes]
rs1515312	0.87[EUR][1000 genomes]
rs1515313	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515314	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1533387	0.84[ASN][1000 genomes]
rs1606813	0.84[EUR][1000 genomes]
rs16866810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866814	0.80[ASN][1000 genomes]
rs16866815	0.80[ASN][1000 genomes]
rs16866819	0.84[EUR][1000 genomes]
rs16866822	0.85[ASN][1000 genomes]
rs16866823	0.84[EUR][1000 genomes]
rs16866832	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16866834	0.84[EUR][1000 genomes]
rs16866842	0.84[ASN][1000 genomes]
rs16866850	0.84[ASN][1000 genomes]
rs16866857	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17818050	0.89[ASN][1000 genomes]
rs2176061	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2222031	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2887110	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34313722	0.91[EUR][1000 genomes]
rs34376589	0.87[EUR][1000 genomes]
rs34528783	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34545498	0.91[EUR][1000 genomes]
rs34663462	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35439427	0.84[EUR][1000 genomes]
rs35664499	0.84[EUR][1000 genomes]
rs36060902	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61432525	0.83[ASN][1000 genomes]
rs6721295	0.87[EUR][1000 genomes]
rs71425640	0.83[EUR][1000 genomes]
rs73039384	0.82[ASN][1000 genomes]
rs73973307	0.84[EUR][1000 genomes]
rs7425514	0.90[ASN][1000 genomes]
rs7581924	0.91[EUR][1000 genomes]
rs7592221	0.86[EUR][1000 genomes]
rs7593595	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7601398	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs908287	0.93[ASN][1000 genomes]
rs9288040	0.87[EUR][1000 genomes]
rs951427	0.84[EUR][1000 genomes]
rs969231	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs988289	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs988290	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180445600-180449400	Weak transcription	Right Atrium	heart
4	chr2:180445800-180449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:180445800-180449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:180445800-180449200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:180446000-180449200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180446200-180449200	Weak transcription	Fetal Heart	heart
9	chr2:180446400-180449200	Weak transcription	Liver	Liver
10	chr2:180446800-180449200	Weak transcription	HepG2	liver

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