Variant report

Variant	rs10189370
Chromosome Location	chr2:37612888-37612889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10165491	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10181043	0.84[ASN][1000 genomes]
rs1024811	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12475384	0.93[ASN][1000 genomes]
rs12476654	0.85[ASN][1000 genomes]
rs13002028	0.90[ASN][1000 genomes]
rs13003908	0.98[ASN][1000 genomes]
rs13035644	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17020669	0.93[ASN][1000 genomes]
rs2373002	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4490163	0.83[ASN][1000 genomes]
rs4549068	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4670705	0.93[ASN][1000 genomes]
rs4670713	0.83[ASN][1000 genomes]
rs6544076	0.85[ASN][1000 genomes]
rs6732454	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37604600-37616800	Weak transcription	Adipose Nuclei	Adipose
2	chr2:37605800-37613800	Weak transcription	HSMMtube	muscle
3	chr2:37605800-37614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:37606000-37614200	Weak transcription	NHLF	lung
5	chr2:37607400-37614000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:37607400-37614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:37607400-37618200	Weak transcription	Right Atrium	heart
8	chr2:37607600-37613600	Weak transcription	NHDF-Ad	bronchial
9	chr2:37607600-37614600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:37609200-37615200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:37609200-37616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:37609200-37616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:37611400-37615600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:37611800-37613600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:37611800-37614200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:37611800-37616800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:37612000-37614400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:37612200-37616600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:37612600-37613800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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