Variant report

Variant	rs1019237
Chromosome Location	chr6:139745739-139745740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2005734	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2908495	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2908496	0.85[CEU][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs2908510	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3010312	0.89[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3010316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095426	0.83[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs887780	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1019237	AHI1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139743800-139754600	Weak transcription	Stomach Mucosa	stomach
2	chr6:139744000-139746400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:139744000-139747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:139744200-139747200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:139744400-139748800	Weak transcription	Pancreas	Pancrea
6	chr6:139744800-139750400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:139745200-139745800	Enhancers	K562	blood
8	chr6:139745600-139747200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:139745600-139750200	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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