Variant report

Variant	rs10192809
Chromosome Location	chr2:55659061-55659062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10209298	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs11887112	1.00[EUR][1000 genomes]
rs6707902	1.00[EUR][1000 genomes]
rs72917943	1.00[EUR][1000 genomes]
rs72919797	1.00[EUR][1000 genomes]
rs7572492	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55655200-55659400	Enhancers	Hela-S3	cervix
2	chr2:55657000-55659200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:55657800-55659200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:55657800-55659200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:55658000-55659200	Enhancers	NHDF-Ad	bronchial
6	chr2:55658400-55660600	Weak transcription	HepG2	liver
7	chr2:55658800-55659200	Enhancers	Brain Substantia Nigra	brain
8	chr2:55659000-55659200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:55659000-55659400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:55659000-55659400	Enhancers	Adipose Nuclei	Adipose
11	chr2:55659000-55659400	Enhancers	A549	lung
12	chr2:55659000-55659600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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