Variant report

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10171052	0.96[EUR][1000 genomes]
rs10179457	0.89[EUR][1000 genomes]
rs10179622	0.89[EUR][1000 genomes]
rs10180242	1.00[EUR][1000 genomes]
rs10186885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10204755	0.89[EUR][1000 genomes]
rs10205609	1.00[EUR][1000 genomes]
rs10210112	0.89[EUR][1000 genomes]
rs13383234	1.00[EUR][1000 genomes]
rs13384047	0.89[EUR][1000 genomes]
rs13384253	0.89[EUR][1000 genomes]
rs13384610	0.85[EUR][1000 genomes]
rs13400391	1.00[EUR][1000 genomes]
rs13401993	0.89[EUR][1000 genomes]
rs13402051	0.89[EUR][1000 genomes]
rs13402119	0.89[EUR][1000 genomes]
rs13404602	0.89[EUR][1000 genomes]
rs13404790	0.89[EUR][1000 genomes]
rs13405155	0.89[EUR][1000 genomes]
rs13415082	1.00[EUR][1000 genomes]
rs13418175	0.89[EUR][1000 genomes]
rs13418296	0.89[EUR][1000 genomes]
rs13418412	0.89[EUR][1000 genomes]
rs13418742	0.81[EUR][1000 genomes]
rs13424239	0.81[EUR][1000 genomes]
rs13426180	1.00[EUR][1000 genomes]
rs1987801	0.89[EUR][1000 genomes]
rs2054614	1.00[EUR][1000 genomes]
rs28794520	1.00[EUR][1000 genomes]
rs56159667	0.89[EUR][1000 genomes]
rs56164335	1.00[EUR][1000 genomes]
rs6754237	0.81[EUR][1000 genomes]
rs72933024	0.81[EUR][1000 genomes]
rs72937324	1.00[AFR][1000 genomes]
rs72937326	1.00[EUR][1000 genomes]
rs72937336	1.00[EUR][1000 genomes]
rs72937359	1.00[EUR][1000 genomes]
rs72937369	0.93[EUR][1000 genomes]
rs72937379	1.00[EUR][1000 genomes]
rs72949047	0.89[EUR][1000 genomes]
rs72949055	0.89[EUR][1000 genomes]
rs7585872	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3459104	chr2:213465833-213470603	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3459102	chr2:213465857-213470603	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3459103	chr2:213465897-213470559	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3459105	chr2:213465897-213470559	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213462600-213483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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