Variant report

Variant	rs1019581
Chromosome Location	chr13:70429047-70429048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1019580	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12428267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12429156	1.00[ASN][1000 genomes]
rs12429374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12430318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12431067	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431120	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12856844	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12877491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1424317	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17070810	1.00[CHB][hapmap]
rs17085369	1.00[CHB][hapmap]
rs17085372	1.00[CHB][hapmap]
rs17085375	1.00[CHB][hapmap]
rs17085391	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17085397	1.00[CHB][hapmap]
rs17085405	1.00[CHB][hapmap]
rs17787264	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2325245	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34595062	0.84[EUR][1000 genomes]
rs35032606	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35231947	1.00[ASN][1000 genomes]
rs35788056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317932	1.00[ASN][1000 genomes]
rs7330188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7335970	1.00[ASN][1000 genomes]
rs73520084	1.00[ASN][1000 genomes]
rs73522005	1.00[ASN][1000 genomes]
rs73522016	1.00[ASN][1000 genomes]
rs74092464	1.00[ASN][1000 genomes]
rs9529634	1.00[CHB][hapmap]
rs9542073	1.00[CHB][hapmap]
rs9564615	1.00[CHB][hapmap]
rs9592662	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70426000-70430400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:70428600-70430200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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