Variant report

Variant	rs10198835
Chromosome Location	chr2:37434380-37434381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:37434257-37434550	MCF-7	breast:	n/a	n/a
2	SETDB1	chr2:37433788-37434657	U2OS	brain:	n/a	n/a
3	POLR2A	chr2:37432687-37435203	K562	blood:	n/a	n/a
4	FOXA1	chr2:37434217-37434510	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37432901..37435417-chr2:37450449..37452931,2	K562	blood:

Variant related genes	Relation type
ENSG00000272054	TF binding region

rs_ID	r²[population]
rs11124576	0.86[CEU][hapmap]
rs11689186	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11695271	0.95[ASN][1000 genomes]
rs12712529	0.88[YRI][hapmap]
rs13422415	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477055	0.80[CEU][hapmap]
rs17409947	0.93[CEU][hapmap]
rs17481834	0.93[CEU][hapmap]
rs2110963	1.00[CEU][hapmap]
rs2160394	1.00[CEU][hapmap]
rs2300881	0.80[CEU][hapmap]
rs2300884	0.81[CEU][hapmap]
rs2300885	1.00[CEU][hapmap]
rs2300892	1.00[CEU][hapmap]
rs2302650	1.00[CEU][hapmap]
rs28430450	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888444	0.99[ASN][1000 genomes]
rs3770763	0.85[CEU][hapmap]
rs3819892	0.93[CEU][hapmap]
rs6726709	1.00[CEU][hapmap]
rs9318	1.00[CEU][hapmap];0.85[YRI][hapmap]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37424400-37446400	Weak transcription	Small Intestine	intestine
2	chr2:37425000-37444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:37426200-37438200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:37426600-37438200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:37426600-37451400	Strong transcription	Fetal Thymus	thymus
6	chr2:37427200-37441200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:37427400-37435600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:37427600-37439600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:37427800-37451400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr2:37428000-37439600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:37429000-37449200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:37429200-37434600	Strong transcription	HSMM	muscle
13	chr2:37429400-37437400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:37429400-37449000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:37429800-37452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:37430200-37438200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr2:37430400-37434800	ZNF genes & repeats	GM12878-XiMat	blood
18	chr2:37430400-37435600	ZNF genes & repeats	A549	lung
19	chr2:37430400-37436600	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr2:37430600-37437800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:37430800-37437200	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr2:37430800-37437800	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr2:37431000-37435200	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:37431200-37434600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:37431200-37434600	Strong transcription	NHDF-Ad	bronchial
26	chr2:37431200-37435000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:37431200-37435000	Strong transcription	HMEC	breast
28	chr2:37431200-37436600	Weak transcription	Fetal Heart	heart
29	chr2:37431200-37438400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr2:37431200-37438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:37431200-37440200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr2:37431200-37441200	Strong transcription	Adipose Nuclei	Adipose
33	chr2:37431200-37442400	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr2:37431200-37450600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr2:37431200-37450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:37431200-37452400	Strong transcription	Dnd41	blood
37	chr2:37431400-37434400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:37431400-37435600	Weak transcription	Brain Anterior Caudate	brain
39	chr2:37431400-37450800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:37431800-37434800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:37432000-37434800	Strong transcription	HepG2	liver
42	chr2:37432000-37435000	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr2:37432200-37436800	ZNF genes & repeats	Fetal Lung	lung
44	chr2:37432400-37437400	ZNF genes & repeats	Fetal Brain Female	brain
45	chr2:37432400-37444600	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr2:37432600-37434600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:37432800-37434400	Strong transcription	Brain Substantia Nigra	brain
48	chr2:37432800-37437400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:37432800-37440400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr2:37433000-37434400	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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