Variant report

Variant	rs10200097
Chromosome Location	chr2:211096878-211096879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10183204	1.00[AMR][1000 genomes]
rs10192256	1.00[AMR][1000 genomes]
rs10210462	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11885370	1.00[AMR][1000 genomes]
rs11888495	1.00[AMR][1000 genomes]
rs11888689	1.00[AMR][1000 genomes]
rs11892155	1.00[AMR][1000 genomes]
rs11897454	1.00[AMR][1000 genomes]
rs11898086	1.00[AMR][1000 genomes]
rs11898587	1.00[AMR][1000 genomes]
rs11899048	1.00[AMR][1000 genomes]
rs11901653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13395167	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13405054	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13414717	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28621658	1.00[AMR][1000 genomes]
rs28668171	1.00[AMR][1000 genomes]
rs35264561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211091000-211099800	Weak transcription	Aorta	Aorta
2	chr2:211092800-211100200	Weak transcription	Gastric	stomach
3	chr2:211095600-211098400	Weak transcription	Pancreas	Pancrea
4	chr2:211096800-211097000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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