Variant report

Variant	rs10204434
Chromosome Location	chr2:37513670-37513671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37512105..37515797-chr2:37531603..37534989,3	MCF-7	breast:
2	chr2:37506946..37509405-chr2:37512326..37514718,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10201396	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206380	0.81[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap]
rs10460527	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11124570	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124573	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11124577	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1160516	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887618	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12469082	0.91[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12471267	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12476195	0.84[ASN][1000 genomes]
rs13390055	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13412560	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13421912	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429526	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs17020344	0.82[EUR][1000 genomes]
rs17020358	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2041838	0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2041839	0.85[ASN][1000 genomes]
rs2075215	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2075216	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2192939	0.89[ASN][1000 genomes]
rs2216114	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239650	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs2251879	0.89[ASN][1000 genomes]
rs2268988	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2287091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287092	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2300883	0.86[ASN][1000 genomes]
rs2300886	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2300887	1.00[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2300888	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2300891	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2300894	0.95[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300895	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28524149	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3213746	0.83[CHD][hapmap];0.84[JPT][hapmap]
rs3755192	0.86[CHD][hapmap];0.90[JPT][hapmap]
rs3770761	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3770767	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3821144	1.00[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4629138	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670684	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670685	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57861177	0.89[ASN][1000 genomes]
rs59559471	0.83[ASN][1000 genomes]
rs6709930	0.87[ASN][1000 genomes]
rs73927424	0.84[ASN][1000 genomes]
rs7593932	0.86[CHD][hapmap]
rs9309002	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9309003	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9309006	0.82[CEU][hapmap]
rs952711	0.86[CHD][hapmap];0.90[JPT][hapmap]
rs952712	0.86[CHD][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
4	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
10	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
11	chr2:37487600-37521200	Weak transcription	Brain Angular Gyrus	brain
12	chr2:37490600-37521000	Strong transcription	Dnd41	blood
13	chr2:37499200-37520800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:37499200-37521400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:37499200-37522200	Weak transcription	Spleen	Spleen
16	chr2:37499400-37522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
18	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:37500200-37518600	Weak transcription	Fetal Stomach	stomach
20	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
21	chr2:37500200-37530200	Weak transcription	Gastric	stomach
22	chr2:37500400-37519200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:37500400-37520400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
25	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:37502400-37516200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr2:37502600-37514600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:37502600-37517800	Weak transcription	Colonic Mucosa	Colon
30	chr2:37502600-37520000	Weak transcription	Fetal Brain Female	brain
31	chr2:37502600-37521600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:37502600-37524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
35	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
36	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:37502800-37514600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:37502800-37518400	Weak transcription	Ovary	ovary
39	chr2:37502800-37518600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:37502800-37533800	Weak transcription	Lung	lung
43	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
44	chr2:37505000-37521000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr2:37505200-37514400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:37505600-37520400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:37505800-37514200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr2:37509200-37516600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr2:37509200-37516600	Weak transcription	Primary hematopoietic stem cells	blood

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