Variant report

Variant	rs10205609
Chromosome Location	chr2:213477268-213477269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213476033..213477807-chr2:213483623..213485149,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10168850	1.00[JPT][hapmap]
rs10171052	0.96[EUR][1000 genomes]
rs10178687	1.00[JPT][hapmap]
rs10179457	0.89[EUR][1000 genomes]
rs10179622	0.89[EUR][1000 genomes]
rs10180242	1.00[EUR][1000 genomes]
rs10180614	1.00[JPT][hapmap]
rs10186885	1.00[EUR][1000 genomes]
rs10193213	1.00[EUR][1000 genomes]
rs10194811	1.00[JPT][hapmap]
rs10204755	0.89[EUR][1000 genomes]
rs10210112	0.89[EUR][1000 genomes]
rs11675580	1.00[JPT][hapmap]
rs11892049	1.00[JPT][hapmap]
rs13015808	1.00[JPT][hapmap]
rs13021394	1.00[JPT][hapmap]
rs13021610	1.00[JPT][hapmap]
rs13383234	1.00[EUR][1000 genomes]
rs13384047	0.89[EUR][1000 genomes]
rs13384253	0.89[EUR][1000 genomes]
rs13384610	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400391	1.00[EUR][1000 genomes]
rs13401993	0.89[EUR][1000 genomes]
rs13402051	0.89[EUR][1000 genomes]
rs13402119	0.89[EUR][1000 genomes]
rs13404602	0.89[EUR][1000 genomes]
rs13404790	0.89[EUR][1000 genomes]
rs13405155	0.89[EUR][1000 genomes]
rs13415082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13418175	0.89[EUR][1000 genomes]
rs13418296	0.89[EUR][1000 genomes]
rs13418412	0.89[EUR][1000 genomes]
rs13418742	0.81[EUR][1000 genomes]
rs13424239	0.81[EUR][1000 genomes]
rs13426180	1.00[EUR][1000 genomes]
rs1384291	1.00[JPT][hapmap]
rs1505372	1.00[JPT][hapmap]
rs16848530	1.00[JPT][hapmap]
rs16848550	1.00[JPT][hapmap]
rs16848553	1.00[JPT][hapmap]
rs16848556	1.00[JPT][hapmap]
rs16848564	1.00[JPT][hapmap]
rs16848593	1.00[JPT][hapmap]
rs16848675	1.00[JPT][hapmap]
rs17259208	1.00[JPT][hapmap]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[JPT][hapmap]
rs1987801	0.89[EUR][1000 genomes]
rs2054614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062930	1.00[JPT][hapmap]
rs28794520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159667	0.89[EUR][1000 genomes]
rs56164335	1.00[EUR][1000 genomes]
rs6752299	1.00[JPT][hapmap]
rs6754237	0.81[EUR][1000 genomes]
rs72933024	0.81[EUR][1000 genomes]
rs72937326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937359	1.00[EUR][1000 genomes]
rs72937369	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949047	0.89[EUR][1000 genomes]
rs72949055	0.89[EUR][1000 genomes]
rs7569142	1.00[JPT][hapmap]
rs7585872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283525	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213462600-213483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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