Variant report

Variant	rs10205851
Chromosome Location	chr2:33432032-33432033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33430736..33432934-chr2:33471410..33474169,2	MCF-7	breast:
2	chr2:33428794..33433443-chr2:33434852..33438418,7	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10048733	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs10048778	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10084248	0.95[YRI][hapmap]
rs10167324	1.00[CEU][hapmap]
rs10167399	1.00[CEU][hapmap]
rs10170803	0.81[YRI][hapmap]
rs10170980	0.86[YRI][hapmap]
rs10172685	1.00[AMR][1000 genomes]
rs10189948	0.91[YRI][hapmap]
rs10201412	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10201620	0.89[YRI][hapmap]
rs10205515	0.80[AFR][1000 genomes]
rs12328471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13387581	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392128	0.87[YRI][hapmap]
rs13401618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13401875	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404181	0.83[AMR][1000 genomes]
rs13417478	1.00[CEU][hapmap]
rs13417974	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17012646	0.89[YRI][hapmap]
rs17012655	0.86[YRI][hapmap]
rs17012660	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17012689	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2290447	0.89[YRI][hapmap]
rs58911278	0.83[AMR][1000 genomes]
rs6543697	0.89[YRI][hapmap]
rs6708543	1.00[CEU][hapmap]
rs6721333	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs6752708	1.00[CEU][hapmap]
rs6757287	0.86[YRI][hapmap]
rs72855734	1.00[AMR][1000 genomes]
rs72858006	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858011	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7583435	0.91[YRI][hapmap]
rs7603774	0.86[YRI][hapmap]
rs9308932	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33409200-33441600	Weak transcription	Psoas Muscle	Psoas
3	chr2:33410400-33438000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:33414000-33434200	Weak transcription	HUVEC	blood vessel
5	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
6	chr2:33415000-33434400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:33415200-33441600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:33415400-33441600	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:33415600-33434200	Weak transcription	K562	blood
10	chr2:33418200-33433400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33418400-33435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:33419000-33434200	Weak transcription	NH-A	brain
13	chr2:33423000-33439400	Weak transcription	Pancreas	Pancrea
14	chr2:33423000-33439600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:33426600-33435000	Weak transcription	Gastric	stomach
16	chr2:33427400-33432200	Weak transcription	Fetal Lung	lung
17	chr2:33428000-33435200	Weak transcription	Ovary	ovary
18	chr2:33428000-33437000	Weak transcription	Liver	Liver
19	chr2:33428200-33432200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:33428400-33433400	Weak transcription	Left Ventricle	heart
21	chr2:33428600-33434400	Weak transcription	Right Ventricle	heart
22	chr2:33428600-33439200	Weak transcription	Right Atrium	heart
23	chr2:33430400-33432200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:33430600-33432200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:33430800-33432400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:33431000-33432200	Weak transcription	Fetal Heart	heart
27	chr2:33431200-33436400	Weak transcription	Aorta	Aorta
28	chr2:33431400-33434400	Weak transcription	NHLF	lung
29	chr2:33431800-33432200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:33431800-33432200	Flanking Active TSS	GM12878-XiMat	blood
31	chr2:33431800-33433000	Enhancers	Rectal Smooth Muscle	rectum
32	chr2:33431800-33433400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:33431800-33436600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:33431800-33439000	Enhancers	NHDF-Ad	bronchial
35	chr2:33432000-33432400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:33432000-33432800	Enhancers	Osteobl	bone
37	chr2:33432000-33433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr2:33432000-33433000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr2:33432000-33433000	Enhancers	Colon Smooth Muscle	Colon
40	chr2:33432000-33433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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