Variant report

Variant	rs10205924
Chromosome Location	chr2:210490279-210490280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10497931	0.87[YRI][hapmap]
rs12328000	0.85[YRI][hapmap]
rs13386656	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs13424532	0.84[AFR][1000 genomes]
rs2159748	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
2	chr2:210480000-210493200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:210481000-210493400	Weak transcription	Pancreas	Pancrea
4	chr2:210481000-210500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:210481400-210493600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210484600-210497200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:210484800-210492800	Weak transcription	Fetal Brain Male	brain
8	chr2:210484800-210496000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:210485400-210494400	Weak transcription	Fetal Brain Female	brain
10	chr2:210486600-210493400	Weak transcription	Brain Angular Gyrus	brain
11	chr2:210487200-210494200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:210488800-210494000	Weak transcription	Brain Anterior Caudate	brain
13	chr2:210489200-210490400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:210489200-210492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:210489200-210493400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:210489600-210493600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:210489800-210493000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210489800-210500400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:210490000-210490400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:210490200-210494200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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