Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55709620..55711839-chr2:55714950..55717947,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC104-2	chr2:55711689-55712077	NONHSAT070792

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10184287	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1037509	0.92[ASN][1000 genomes]
rs11125578	0.92[ASN][1000 genomes]
rs11884094	0.87[ASN][1000 genomes]
rs12999476	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13399420	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13412745	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1454425	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4671245	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4672046	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6545500	0.93[ASN][1000 genomes]
rs6545501	0.88[ASN][1000 genomes]
rs6545502	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6719033	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6724457	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7567744	0.93[ASN][1000 genomes]
rs7570226	0.88[ASN][1000 genomes]
rs7570299	0.88[ASN][1000 genomes]
rs7593229	0.88[ASN][1000 genomes]
rs897095	0.88[ASN][1000 genomes]
rs897096	0.88[ASN][1000 genomes]
rs897097	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55706400-55714600	Weak transcription	K562	blood
2	chr2:55710000-55716800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:55711000-55713600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:55711000-55717000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:55711200-55714200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: