Variant report

Variant	rs10209937
Chromosome Location	chr2:37453629-37453630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37453148..37455201-chr2:37485988..37487666,2	K562	blood:
2	chr2:37447093..37450446-chr2:37450572..37453821,4	K562	blood:
3	chr2:37453426..37455818-chr2:37549364..37551378,2	K562	blood:
4	chr2:37415796..37419899-chr2:37451896..37456722,5	K562	blood:

Variant related genes	Relation type
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10176949	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10177176	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs10182759	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10184179	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs10190959	0.92[CEU][hapmap]
rs1056021	0.86[JPT][hapmap]
rs10865123	0.90[EUR][1000 genomes]
rs11124569	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11124574	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1137437	1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs1137453	0.91[EUR][1000 genomes]
rs1158218	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[TSI][hapmap]
rs1158219	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs11679617	0.81[EUR][1000 genomes]
rs11680401	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11683872	0.80[EUR][1000 genomes]
rs11685805	0.82[EUR][1000 genomes]
rs11893943	0.81[EUR][1000 genomes]
rs12618410	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs12993090	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2041836	0.92[CEU][hapmap]
rs2268990	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2287093	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2300893	0.84[EUR][1000 genomes]
rs2888434	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3213745	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3755195	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770752	0.88[CEU][hapmap]
rs3770759	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs4998429	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6743782	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74177070	0.80[EUR][1000 genomes]
rs7589296	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs876462	0.92[CEU][hapmap]
rs9309004	0.92[CEU][hapmap]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10209937	CEBPZ	cis	Thyroid	GTEx
rs10209937	CEBPZ	cis	cerebellum	SCAN
rs10209937	CEBPZ	cis	Esophagus Mucosa	GTEx
rs10209937	CEBPZ	cis	lung	GTEx
rs10209937	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs10209937	CEBPZ	cis	lymphoblastoid	seeQTL
rs10209937	PRKD3	cis	lung	GTEx
rs10209937	CEBPZ	cis	Esophagus Muscularis	GTEx
rs10209937	CEBPZ	cis	Nerve Tibial	GTEx
rs10209937	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs10209937	RP11-423P10.2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37436800-37456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37437200-37456600	Weak transcription	Stomach Mucosa	stomach
3	chr2:37438000-37455200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:37439800-37456600	Weak transcription	Brain Substantia Nigra	brain
5	chr2:37440400-37455200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:37440800-37454000	Weak transcription	Esophagus	oesophagus
7	chr2:37442800-37456000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:37443000-37456000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:37446800-37454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:37448200-37455200	Weak transcription	Right Ventricle	heart
11	chr2:37448400-37455000	Weak transcription	Gastric	stomach
12	chr2:37448400-37455200	Weak transcription	Pancreas	Pancrea
13	chr2:37448400-37456600	Weak transcription	Aorta	Aorta
14	chr2:37448400-37456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:37448400-37457800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:37448800-37454000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:37448800-37456600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:37449000-37454000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:37449000-37454200	Weak transcription	HSMMtube	muscle
20	chr2:37449000-37454600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:37449200-37454000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr2:37449400-37454000	Weak transcription	Fetal Intestine Small	intestine
23	chr2:37449400-37454000	Weak transcription	Fetal Stomach	stomach
24	chr2:37449600-37454000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:37450400-37454000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:37450400-37454200	Weak transcription	Brain Anterior Caudate	brain
27	chr2:37450600-37454000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:37450600-37454000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:37450600-37454000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr2:37450600-37454200	Weak transcription	Fetal Kidney	kidney
31	chr2:37450600-37454200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:37451000-37454200	Weak transcription	Placenta	Placenta
33	chr2:37451000-37454200	Weak transcription	NHDF-Ad	bronchial
34	chr2:37451200-37454000	Weak transcription	Colonic Mucosa	Colon
35	chr2:37451200-37454000	Weak transcription	Psoas Muscle	Psoas
36	chr2:37451200-37454600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:37451400-37453800	Weak transcription	Fetal Thymus	thymus
38	chr2:37451400-37454000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr2:37451400-37454000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr2:37451400-37454000	Weak transcription	Left Ventricle	heart
41	chr2:37451400-37454400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr2:37451600-37453800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:37451600-37454600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr2:37452400-37453800	Weak transcription	NHEK	skin
45	chr2:37452400-37454000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:37452400-37454000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr2:37452400-37454200	Weak transcription	HUVEC	blood vessel
48	chr2:37452400-37456600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr2:37452600-37454000	Weak transcription	Ovary	ovary
50	chr2:37453000-37456000	Strong transcription	Primary monocytes fromperipheralblood	blood

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