The 2.0 version of rSNPBase

Variant report

Variant rs10209969
Chromosome Location chr2:11905876-11905877
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11888400-11916400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:11890400-11906400 Weak transcription Fetal Brain Male brain
3 chr2:11893800-11906400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr2:11895000-11906000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr2:11895000-11906200 Weak transcription HSMM muscle
6 chr2:11895000-11907000 Weak transcription Colon Smooth Muscle Colon
7 chr2:11895000-11918200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr2:11897600-11909000 Weak transcription Psoas Muscle Psoas
9 chr2:11898600-11906000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:11899200-11906000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr2:11899200-11911200 Weak transcription Small Intestine intestine
12 chr2:11900600-11908800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr2:11900600-11918000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr2:11900800-11912200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr2:11901200-11909000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr2:11901200-11915000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr2:11901600-11914200 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr2:11901800-11914000 Strong transcription Primary T regulatory cells fromperipheralblood blood
19 chr2:11901800-11918600 Strong transcription Fetal Adrenal Gland Adrenal Gland
20 chr2:11902200-11906600 Weak transcription Fetal Kidney kidney
21 chr2:11902200-11913800 Strong transcription NHLF lung
22 chr2:11902800-11906000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr2:11902800-11906000 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr2:11902800-11912200 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr2:11902800-11912400 Strong transcription Primary B cells from peripheral blood blood
26 chr2:11902800-11913800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr2:11903000-11908400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr2:11903000-11913600 Strong transcription Primary T helper cells fromperipheralblood blood
29 chr2:11903000-11914200 Strong transcription Primary T helper cells PMA-I stimulated --
30 chr2:11903000-11915000 Strong transcription NHEK skin
31 chr2:11903200-11906400 Genic enhancers Skeletal Muscle Male skeletal muscle
32 chr2:11903200-11915000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
33 chr2:11903400-11907000 Strong transcription Primary hematopoietic stem cells blood
34 chr2:11903400-11914600 Strong transcription Dnd41 blood
35 chr2:11903600-11906400 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr2:11903600-11911600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr2:11903800-11908600 Strong transcription HMEC breast
38 chr2:11903800-11913800 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr2:11903800-11914800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr2:11904000-11914600 Strong transcription Primary T helper naive cells fromperipheralblood blood
41 chr2:11904400-11906200 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr2:11904400-11914800 Strong transcription Primary B cells from cord blood blood
43 chr2:11904400-11914800 Strong transcription Primary T cells from cord blood blood
44 chr2:11904600-11906600 Weak transcription H1 Cell Line embryonic stem cell
45 chr2:11904600-11907400 Strong transcription Hela-S3 cervix
46 chr2:11904600-11908200 Strong transcription Fetal Muscle Trunk muscle
47 chr2:11904600-11908600 Strong transcription Muscle Satellite Cultured Cells --
48 chr2:11904600-11909000 Strong transcription Esophagus oesophagus
49 chr2:11904600-11909200 Strong transcription Fetal Brain Female brain
50 chr2:11904600-11909200 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015