Variant report

Variant	rs10209981
Chromosome Location	chr2:182108245-182108246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10186560	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211135	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13020845	0.85[JPT][hapmap]
rs13428406	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867385	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16867386	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16867388	0.80[AMR][1000 genomes]
rs16867390	0.80[AMR][1000 genomes]
rs16867391	0.80[AMR][1000 genomes]
rs16867392	0.80[AMR][1000 genomes]
rs16867393	0.80[AMR][1000 genomes]
rs16867394	0.80[AMR][1000 genomes]
rs16867404	0.87[CEU][hapmap]
rs17455869	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7579986	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182104600-182108400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:182105200-182108400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:182107000-182108400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:182107000-182109000	Weak transcription	Thymus	Thymus
5	chr2:182107000-182117400	Weak transcription	Dnd41	blood
6	chr2:182107400-182109000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:182107400-182117400	Weak transcription	Fetal Thymus	thymus
8	chr2:182107400-182127600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:182108000-182117200	Weak transcription	Primary T cells from cord blood	blood
10	chr2:182108000-182117200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:182108000-182117200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:182108200-182117200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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