Variant report

Variant	rs10211382
Chromosome Location	chr2:128154461-128154462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128144095..128150105-chr2:128153920..128160111,11	MCF-7	breast:
2	chr2:128153413..128157536-chr2:128163810..128168101,4	K562	blood:
3	chr2:128154427..128157643-chr2:128157781..128161017,3	K562	blood:
4	chr2:128143860..128148648-chr2:128154163..128162464,14	MCF-7	breast:
5	chr2:128143318..128152182-chr2:128154033..128162255,17	K562	blood:

Variant related genes	Relation type
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10169028	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178188	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195774	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206392	1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10221754	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439213	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451530	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1128974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129121	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385611	0.86[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs13406313	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421256	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424947	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429050	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13431911	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1604817	0.85[JPT][hapmap]
rs1607437	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755310	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4150448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150507	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4536600	0.85[JPT][hapmap]
rs55826634	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56276844	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57547812	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878090	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283013	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306090	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710541	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727155	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740368	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6743815	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750648	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72956480	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964335	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964344	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964352	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964361	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564189	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584829	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7586961	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878461	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs908787	1.00[EUR][1000 genomes]
rs9808452	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
8	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain
11	chr2:128146600-128155400	Weak transcription	Placenta	Placenta
12	chr2:128146600-128155400	Weak transcription	Spleen	Spleen
13	chr2:128146600-128155600	Weak transcription	Brain Anterior Caudate	brain
14	chr2:128146600-128155600	Weak transcription	Colonic Mucosa	Colon
15	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
16	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
18	chr2:128147000-128155000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:128148600-128155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:128148600-128155200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:128148800-128155200	Weak transcription	GM12878-XiMat	blood
22	chr2:128148800-128155400	Weak transcription	HepG2	liver
23	chr2:128149000-128155200	Weak transcription	Fetal Intestine Large	intestine
24	chr2:128150200-128155400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:128150400-128155200	Weak transcription	HSMM	muscle
26	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:128150600-128155200	Weak transcription	HSMMtube	muscle
28	chr2:128150600-128155400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:128150600-128158200	Weak transcription	Fetal Thymus	thymus
30	chr2:128150800-128155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr2:128150800-128155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:128151000-128155000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:128151000-128155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:128151000-128155200	Weak transcription	Hela-S3	cervix
35	chr2:128151000-128155400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr2:128151000-128155400	Weak transcription	HMEC	breast
37	chr2:128151000-128155400	Weak transcription	Osteobl	bone
38	chr2:128151200-128155200	Weak transcription	K562	blood
39	chr2:128152000-128158200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:128152200-128155000	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:128152200-128155400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:128152400-128155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:128152400-128155600	Weak transcription	Lung	lung
44	chr2:128152400-128155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:128152400-128158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:128152600-128155200	Weak transcription	Fetal Intestine Small	intestine
47	chr2:128152600-128155200	Weak transcription	A549	lung
48	chr2:128152600-128165800	Weak transcription	Aorta	Aorta
49	chr2:128152800-128155000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:128153000-128155600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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