Variant report

Variant	rs10213645
Chromosome Location	chr4:141945025-141945026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10001746	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17425634	0.90[CEU][hapmap];0.96[GIH][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28445273	0.84[EUR][1000 genomes]
rs28627758	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9997698	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:141942800-141948600	Weak transcription	Osteobl	bone
3	chr4:141943000-141948800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:141943200-141945800	Enhancers	Fetal Heart	heart
5	chr4:141943200-141948000	Weak transcription	Left Ventricle	heart
6	chr4:141943200-141948200	Weak transcription	Psoas Muscle	Psoas
7	chr4:141943200-141949200	Weak transcription	Ovary	ovary
8	chr4:141943400-141948200	Weak transcription	NHLF	lung
9	chr4:141943400-141948400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:141943400-141948600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:141943600-141947200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:141943600-141948800	Weak transcription	Fetal Kidney	kidney
13	chr4:141943600-141948800	Weak transcription	NHDF-Ad	bronchial
14	chr4:141943800-141947200	Weak transcription	Fetal Stomach	stomach
15	chr4:141943800-141947400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:141943800-141947600	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:141943800-141948000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:141943800-141948000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:141943800-141948600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:141943800-141948600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:141944000-141945200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:141944000-141947000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:141944000-141948000	Weak transcription	Fetal Lung	lung
24	chr4:141944000-141953200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:141944600-141948600	Weak transcription	Fetal Brain Male	brain

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