Variant report

Variant	rs10215830
Chromosome Location	chr7:101796783-101796784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101792126..101793850-chr7:101795352..101798299,2	MCF-7	breast:
2	chr7:101791487..101793920-chr7:101795283..101798105,2	K562	blood:
3	chr7:101789603..101792075-chr7:101795713..101797542,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALKBH4-2	chr7:101796635-101797336	ENSG00000259263.1

rs_ID	r²[population]
rs10215627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10243429	0.92[LWK][hapmap]
rs10265016	1.00[EUR][1000 genomes]
rs10268463	1.00[MEX][hapmap]
rs12538286	1.00[LWK][hapmap]
rs17132157	1.00[MEX][hapmap]
rs17134996	1.00[MEX][hapmap]
rs59310822	1.00[EUR][1000 genomes]
rs73712451	1.00[EUR][1000 genomes]
rs73712453	1.00[EUR][1000 genomes]
rs7776498	0.91[LWK][hapmap]
rs7798358	1.00[LWK][hapmap];0.82[MKK][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs10215830	GPC4	trans	lymphoblastoid	seeQTL
rs10215830	KL	trans	lymphoblastoid	seeQTL

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
2	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:101772000-101796800	Weak transcription	Liver	Liver
4	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
6	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
8	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:101782000-101797600	Weak transcription	Fetal Brain Female	brain
10	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:101784800-101801400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:101784800-101801600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:101788800-101801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
18	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
20	chr7:101790800-101811800	Weak transcription	Osteobl	bone
21	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:101791000-101801800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
25	chr7:101793800-101797000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:101794400-101799800	Enhancers	Placenta	Placenta
28	chr7:101794600-101798200	Weak transcription	K562	blood
29	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:101795000-101796800	Enhancers	Fetal Intestine Large	intestine
31	chr7:101795200-101797200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:101795200-101797200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:101795200-101797200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:101795200-101797400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr7:101795200-101797400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr7:101795200-101797400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:101795400-101797200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr7:101795400-101797200	Enhancers	Fetal Heart	heart
39	chr7:101795400-101797400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr7:101795400-101797600	Strong transcription	Primary T cells from cord blood	blood
41	chr7:101795400-101797600	Strong transcription	Dnd41	blood
42	chr7:101795600-101797200	Enhancers	Colon Smooth Muscle	Colon
43	chr7:101795800-101796800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr7:101795800-101797000	Enhancers	Stomach Smooth Muscle	stomach
45	chr7:101795800-101797000	Enhancers	Hela-S3	cervix
46	chr7:101795800-101797200	Enhancers	H9 Cell Line	embryonic stem cell
47	chr7:101795800-101797200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:101795800-101797200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:101795800-101797200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:101795800-101797200	Genic enhancers	Lung	lung

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