Variant report

Variant	rs10215980
Chromosome Location	chr7:137435004-137435005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10240406	0.84[CHB][hapmap]
rs1025085	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1025087	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10263086	0.84[CHB][hapmap]
rs13234743	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1345918	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1424372	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33916081	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34025316	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3778804	0.84[CHB][hapmap]
rs3800636	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3800637	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3800639	0.84[CHB][hapmap]
rs3800640	0.84[CHB][hapmap]
rs3800644	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944527	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6957797	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803175	0.83[CHB][hapmap]
rs9784934	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137416600-137438000	Weak transcription	NH-A	brain
2	chr7:137419400-137438200	Weak transcription	HSMM	muscle
3	chr7:137419600-137437800	Weak transcription	HSMMtube	muscle
4	chr7:137419800-137438000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:137430200-137438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:137432200-137439000	Weak transcription	Osteobl	bone
7	chr7:137432400-137438200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:137432600-137437800	Weak transcription	Aorta	Aorta
9	chr7:137432600-137438800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:137432800-137438000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137432800-137438000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:137432800-137438000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:137432800-137438000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:137432800-137438200	Weak transcription	Brain Substantia Nigra	brain
15	chr7:137433200-137437600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:137433400-137437600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:137433400-137439200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr7:137433600-137438200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:137434200-137437600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:137434200-137438000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:137434400-137437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:137434400-137437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:137434400-137438200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:137434600-137435600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:137434600-137438200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:137434800-137435200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:137434800-137437800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:137434800-137437800	Weak transcription	Muscle Satellite Cultured Cells	--

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