Variant report
| Variant | rs10216158 |
|---|---|
| Chromosome Location | chr7:126398521-126398522 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10232001 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs10279350 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs10280247 | 0.81[CHB][hapmap] |
| rs10487458 | 0.95[CHB][hapmap];0.87[JPT][hapmap] |
| rs10808227 | 0.81[CHB][hapmap] |
| rs10954134 | 0.82[CHB][hapmap] |
| rs10954135 | 0.82[CHB][hapmap] |
| rs11978951 | 0.81[CHB][hapmap] |
| rs1362001 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1946116 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
| rs2237767 | 0.81[CHB][hapmap] |
| rs2283070 | 0.82[CHB][hapmap] |
| rs2299500 | 0.80[CHB][hapmap] |
| rs2299513 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2299514 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4728050 | 0.81[CHB][hapmap] |
| rs6467095 | 0.81[CHB][hapmap] |
| rs6467096 | 0.81[CHB][hapmap] |
| rs6974018 | 0.81[CHB][hapmap] |
| rs7801141 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap] |
| rs7804521 | 0.81[CHB][hapmap] |
| rs9649507 | 0.81[CHB][hapmap] |
| rs9969183 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
