Variant report

Variant	rs10218997
Chromosome Location	chr10:52842146-52842147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10995567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10995590	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813092	1.00[CEU][hapmap]
rs12247631	0.95[AMR][1000 genomes]
rs12253781	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12264657	1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265235	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339626	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339670	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2660210	1.00[CEU][hapmap]
rs28438967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2879545	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5011544	1.00[MEX][hapmap]
rs7096841	1.00[CEU][hapmap]
rs74133958	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7476747	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:52836200-52842800	Weak transcription	Psoas Muscle	Psoas
4	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
5	chr10:52837200-52843000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:52837600-52842800	Weak transcription	NHDF-Ad	bronchial
8	chr10:52838200-52842800	Weak transcription	Left Ventricle	heart
9	chr10:52839000-52844000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:52839600-52843000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:52840000-52843200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:52840200-52842800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:52840400-52842800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:52840400-52842800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:52840400-52852200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:52840600-52842400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:52840600-52842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:52840600-52842600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:52840600-52842600	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:52840600-52842600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:52840600-52842600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:52840600-52842800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:52840600-52842800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:52840600-52842800	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:52840600-52843000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:52840600-52843400	Weak transcription	Fetal Kidney	kidney
27	chr10:52840600-52843400	Weak transcription	Fetal Lung	lung
28	chr10:52841000-52842800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:52841200-52842800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:52841200-52842800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:52841400-52843000	Weak transcription	Aorta	Aorta
32	chr10:52841600-52842600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:52841600-52842600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:52841600-52842800	Weak transcription	NHLF	lung
35	chr10:52841800-52842800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:52842000-52842800	Weak transcription	Fetal Stomach	stomach
37	chr10:52842000-52844600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links