Variant report

Variant	rs10220277
Chromosome Location	chr14:70166706-70166707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70162413..70165840-chr14:70166006..70170268,6	K562	blood:
2	chr14:70162821..70165355-chr14:70166037..70169969,5	K562	blood:
3	chr14:70159393..70161509-chr14:70164413..70166965,3	MCF-7	breast:
4	chr14:70158843..70161207-chr14:70166333..70168210,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10047848	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10131362	1.00[EUR][1000 genomes]
rs10137013	1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10138453	1.00[EUR][1000 genomes]
rs10144038	1.00[EUR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs10148264	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs10148957	1.00[EUR][1000 genomes]
rs10149936	0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs10150246	1.00[EUR][1000 genomes]
rs10151989	1.00[EUR][1000 genomes]
rs11847514	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1275744	1.00[EUR][1000 genomes]
rs28435330	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28538272	0.84[AFR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs28671429	1.00[EUR][1000 genomes]
rs28757382	1.00[EUR][1000 genomes]
rs28758769	1.00[EUR][1000 genomes]
rs28879830	1.00[EUR][1000 genomes]
rs7154537	1.00[EUR][1000 genomes]
rs9805962	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70158400-70167000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr14:70158400-70170000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:70159400-70170200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:70160000-70177600	Weak transcription	Fetal Brain Female	brain
5	chr14:70160200-70170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:70160400-70169000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:70161000-70169000	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:70161200-70176200	Weak transcription	NHDF-Ad	bronchial
9	chr14:70161600-70179200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:70162200-70168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:70162800-70178000	Weak transcription	HSMM	muscle
12	chr14:70163000-70168000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:70163000-70168000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr14:70163000-70168000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:70163000-70170000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:70163000-70170000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:70163000-70170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:70163000-70170200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:70163000-70175600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:70163000-70177800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:70163200-70167400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:70163200-70175400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:70163400-70167200	Weak transcription	Fetal Lung	lung
24	chr14:70163400-70168000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:70163400-70170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:70163400-70179400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr14:70163400-70183400	Weak transcription	Hela-S3	cervix
28	chr14:70163600-70166800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:70163600-70168000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:70163600-70168000	Weak transcription	Fetal Stomach	stomach
31	chr14:70163600-70168400	Weak transcription	Thymus	Thymus
32	chr14:70163600-70170400	Weak transcription	HSMMtube	muscle
33	chr14:70163600-70170400	Weak transcription	NH-A	brain
34	chr14:70163600-70176000	Weak transcription	NHEK	skin
35	chr14:70163800-70167800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:70163800-70168400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:70163800-70171000	Weak transcription	Osteobl	bone
38	chr14:70164000-70167400	Weak transcription	Brain Angular Gyrus	brain
39	chr14:70164000-70167800	Weak transcription	Brain Substantia Nigra	brain
40	chr14:70164000-70168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:70164000-70168000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:70164000-70168000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:70164000-70168200	Weak transcription	HUVEC	blood vessel
44	chr14:70164000-70168400	Enhancers	GM12878-XiMat	blood
45	chr14:70164000-70169200	Weak transcription	Colonic Mucosa	Colon
46	chr14:70164000-70169200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr14:70164000-70170200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:70164000-70170400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:70164000-70178800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:70164200-70168000	Weak transcription	Primary T cells fromperipheralblood	blood

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