Variant report

Variant	rs10220281
Chromosome Location	chr14:37557598-37557599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1012199	0.80[ASN][1000 genomes]
rs10132328	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10133673	0.89[ASN][1000 genomes]
rs10136238	0.89[ASN][1000 genomes]
rs10141752	0.89[ASN][1000 genomes]
rs10142021	0.89[ASN][1000 genomes]
rs10148774	0.93[EUR][1000 genomes]
rs10220604	0.90[ASN][1000 genomes]
rs10483485	0.89[ASN][1000 genomes]
rs12050169	0.95[ASN][1000 genomes]
rs12050463	0.97[ASN][1000 genomes]
rs12717260	0.95[EUR][1000 genomes]
rs12889634	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106189	0.89[ASN][1000 genomes]
rs17106209	0.89[ASN][1000 genomes]
rs17106216	0.89[ASN][1000 genomes]
rs17106275	0.98[ASN][1000 genomes]
rs17106290	0.98[ASN][1000 genomes]
rs17106291	0.98[ASN][1000 genomes]
rs17106333	0.80[ASN][1000 genomes]
rs17106404	0.80[ASN][1000 genomes]
rs17106433	0.80[ASN][1000 genomes]
rs17841015	0.89[ASN][1000 genomes]
rs1884220	0.98[ASN][1000 genomes]
rs1884221	0.95[ASN][1000 genomes]
rs1884775	0.89[ASN][1000 genomes]
rs1884777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1950376	0.98[ASN][1000 genomes]
rs1950377	0.93[EUR][1000 genomes]
rs1950814	0.89[ASN][1000 genomes]
rs1955760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1955761	0.80[ASN][1000 genomes]
rs1955762	0.80[ASN][1000 genomes]
rs1956423	0.89[ASN][1000 genomes]
rs1956424	0.89[ASN][1000 genomes]
rs1998121	0.89[ASN][1000 genomes]
rs2057171	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415379	0.92[ASN][1000 genomes]
rs2415380	0.92[ASN][1000 genomes]
rs2415384	0.93[EUR][1000 genomes]
rs28517624	0.89[ASN][1000 genomes]
rs28593311	0.84[ASN][1000 genomes]
rs4356385	0.94[ASN][1000 genomes]
rs4363773	0.93[EUR][1000 genomes]
rs6571782	0.91[EUR][1000 genomes]
rs7140991	0.96[ASN][1000 genomes]
rs74045463	0.88[ASN][1000 genomes]
rs74045478	0.98[ASN][1000 genomes]
rs8008478	0.98[ASN][1000 genomes]
rs8014186	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8019489	0.92[ASN][1000 genomes]
rs8020153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37553400-37562600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:37553600-37557800	Weak transcription	Pancreas	Pancrea
3	chr14:37557200-37558000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links