Variant report

Variant	rs10222011
Chromosome Location	chr20:24674338-24674339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57330425	1.00[AMR][1000 genomes]
rs6106896	1.00[AMR][1000 genomes]
rs6106897	1.00[AMR][1000 genomes]
rs6114756	1.00[AMR][1000 genomes]
rs6114761	1.00[AMR][1000 genomes]
rs6114762	1.00[AMR][1000 genomes]
rs6114824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341698	1.00[AMR][1000 genomes]
rs73901851	1.00[AMR][1000 genomes]
rs73902581	1.00[AMR][1000 genomes]
rs8118433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585744	chr20:24647725-24685440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24661400-24676000	Weak transcription	Fetal Kidney	kidney
2	chr20:24666600-24684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24672400-24677200	Enhancers	Fetal Thymus	thymus
4	chr20:24672800-24674400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr20:24673000-24674400	Enhancers	Primary hematopoietic stem cells	blood
6	chr20:24673200-24674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:24673400-24674600	Weak transcription	Spleen	Spleen
8	chr20:24673400-24674800	Enhancers	Left Ventricle	heart
9	chr20:24673800-24676600	Weak transcription	Thymus	Thymus
10	chr20:24674000-24676000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr20:24674200-24675800	Enhancers	Right Atrium	heart
12	chr20:24674200-24676200	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links