Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10225708	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10240139	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10279616	0.88[LWK][hapmap];0.92[MKK][hapmap];0.93[AFR][1000 genomes]
rs11974803	1.00[EUR][1000 genomes]
rs17149848	1.00[EUR][1000 genomes]
rs17149858	1.00[EUR][1000 genomes]
rs17149911	1.00[EUR][1000 genomes]
rs17683462	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17683715	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17684388	1.00[CHB][hapmap]
rs2299455	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2896374	0.94[MKK][hapmap]
rs35009695	0.88[AFR][1000 genomes]
rs3808152	0.81[YRI][hapmap];0.93[AFR][1000 genomes]
rs4728048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57281612	1.00[EUR][1000 genomes]
rs58516151	1.00[EUR][1000 genomes]
rs60676251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61347840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61514376	1.00[EUR][1000 genomes]
rs6467093	1.00[CHB][hapmap]
rs6467094	1.00[CHB][hapmap]
rs6942895	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6974164	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126325000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:126324400-126325200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:126324800-126326800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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