Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224336	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10227324	1.00[JPT][hapmap]
rs10240139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246935	1.00[JPT][hapmap]
rs10277033	1.00[JPT][hapmap]
rs1345210	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1361991	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17613247	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17683462	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17683715	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17684388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17691394	0.90[EUR][1000 genomes]
rs2051681	1.00[JPT][hapmap]
rs28693977	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4728048	1.00[ASN][1000 genomes]
rs60676251	1.00[ASN][1000 genomes]
rs61347840	1.00[ASN][1000 genomes]
rs6467093	1.00[CHB][hapmap]
rs6467094	1.00[CHB][hapmap]
rs6974164	1.00[CHB][hapmap]
rs9986951	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126342000-126367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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