Variant report

Variant	rs10225745
Chromosome Location	chr7:101709394-101709395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101706528..101709517-chr7:101721356..101724154,2	K562	blood:
2	chr7:101619172..101621456-chr7:101707365..101710139,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10224866	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10230856	0.94[EUR][1000 genomes]
rs10234321	0.94[EUR][1000 genomes]
rs10242721	0.91[EUR][1000 genomes]
rs10244039	0.91[EUR][1000 genomes]
rs10254170	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10268506	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112504	0.91[EUR][1000 genomes]
rs12113028	0.88[EUR][1000 genomes]
rs12113693	0.88[EUR][1000 genomes]
rs58886458	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7802186	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7802265	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7804429	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7808639	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv607985	chr7:101683563-101718950	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101689400-101714600	Weak transcription	HSMMtube	muscle
2	chr7:101689800-101714800	Weak transcription	NHLF	lung
3	chr7:101690600-101713800	Weak transcription	Fetal Lung	lung
4	chr7:101690600-101713800	Weak transcription	Ovary	ovary
5	chr7:101697600-101711800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:101697800-101709800	Weak transcription	Thymus	Thymus
7	chr7:101697800-101711800	Weak transcription	HepG2	liver
8	chr7:101698000-101712000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:101699800-101712000	Weak transcription	Primary T cells from cord blood	blood
10	chr7:101700000-101713800	Weak transcription	Aorta	Aorta
11	chr7:101703800-101713400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:101704200-101712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:101705400-101712400	Weak transcription	Primary B cells from cord blood	blood
14	chr7:101705600-101709800	Weak transcription	Dnd41	blood
15	chr7:101705600-101713800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr7:101705600-101714800	Weak transcription	Fetal Kidney	kidney
17	chr7:101705600-101717400	Weak transcription	Pancreas	Pancrea
18	chr7:101705800-101713200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:101706000-101712600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:101707000-101709600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:101707200-101738000	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:101707400-101712400	Weak transcription	Fetal Intestine Large	intestine
23	chr7:101707400-101714400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:101707400-101715800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:101707600-101713200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:101707600-101713800	Weak transcription	HSMM	muscle
27	chr7:101707600-101714600	Weak transcription	Osteobl	bone
28	chr7:101707600-101716400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:101707800-101712000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:101707800-101713000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:101707800-101713600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:101707800-101713800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:101708000-101709600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:101708000-101712000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr7:101708000-101713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:101708000-101713400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:101708000-101713800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:101708000-101714800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr7:101708000-101715000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:101708000-101722800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:101708200-101711800	Weak transcription	Liver	Liver
42	chr7:101708200-101712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:101708200-101712000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:101708200-101712000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:101708200-101712800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:101708200-101713000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:101708200-101713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:101708200-101713200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:101708200-101713200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:101708200-101713200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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