Variant report
| Variant | rs10225876 |
|---|---|
| Chromosome Location | chr7:138124029-138124030 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CBX3 | chr7:138123872-138124645 | K562 | blood: | n/a | n/a |
| 2 | TEAD4 | chr7:138123992-138124420 | K562 | blood: | n/a | n/a |
| 3 | E2F6 | chr7:138124019-138124217 | K562 | blood: | n/a | n/a |
| 4 | E2F4 | chr7:138123925-138124457 | MCF10A-Er-Src | breast: | n/a | n/a |
| 5 | MAX | chr7:138123987-138124318 | K562 | blood: | n/a | n/a |
| 6 | MAX | chr7:138123873-138124345 | K562 | blood: | n/a | n/a |
| 7 | CBX3 | chr7:138123952-138124388 | K562 | blood: | n/a | n/a |
| 8 | STAT5A | chr7:138123882-138124405 | K562 | blood: | n/a | n/a |
| 9 | ATF3 | chr7:138124027-138124388 | K562 | blood: | n/a | n/a |
| 10 | TRIM28 | chr7:138123899-138124514 | K562 | blood: | n/a | n/a |
| 11 | ZNF384 | chr7:138123742-138124357 | K562 | blood: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:138123228..138126392-chr7:138142592..138145835,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214815 | TF binding region |
| ENSG00000122779 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10246196 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10250362 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12668679 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17169596 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17169597 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2353346 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2883142 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4732317 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs55875241 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55924435 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56977478 | 0.82[AMR][1000 genomes] |
| rs62491077 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62491079 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62491082 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6973057 | 0.82[AMR][1000 genomes] |
| rs752158 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831153 | chr7:138078179-138265648 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:138119400-138125800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
