Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10226675	1.00[CEU][hapmap]
rs10227769	1.00[CEU][hapmap]
rs10234721	1.00[ASN][1000 genomes]
rs10234740	0.82[AMR][1000 genomes]
rs10241965	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10243967	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10259050	1.00[ASN][1000 genomes]
rs10259156	1.00[ASN][1000 genomes]
rs10261152	1.00[ASN][1000 genomes]
rs10273755	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10280829	1.00[ASN][1000 genomes]
rs11563676	1.00[CEU][hapmap]
rs1419388	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863250	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17864174	1.00[ASN][1000 genomes]
rs17864176	1.00[ASN][1000 genomes]
rs17866743	1.00[ASN][1000 genomes]
rs17867800	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867807	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3779537	0.82[AMR][1000 genomes]
rs6947960	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961760	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961944	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806263	1.00[CEU][hapmap]
rs7806403	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126873400-126874800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:126874600-126875000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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