Variant report

Variant	rs10226760
Chromosome Location	chr7:112145817-112145818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10256618	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273549	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10279583	1.00[ASN][1000 genomes]
rs11981674	1.00[ASN][1000 genomes]
rs3128431	1.00[ASN][1000 genomes]
rs6955444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970165	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424473	1.00[ASN][1000 genomes]
rs740358	1.00[ASN][1000 genomes]
rs7787583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112142400-112146000	Enhancers	Left Ventricle	heart
2	chr7:112143000-112146400	Enhancers	K562	blood
3	chr7:112144200-112148800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:112144400-112150000	Weak transcription	Right Ventricle	heart
5	chr7:112144800-112146400	Enhancers	Fetal Heart	heart
6	chr7:112144800-112146400	Enhancers	Right Atrium	heart
7	chr7:112145600-112146000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:112145600-112146000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:112145600-112146000	Enhancers	Brain Hippocampus Middle	brain
10	chr7:112145600-112146200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:112145600-112146200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:112145600-112146400	Enhancers	Fetal Intestine Large	intestine
13	chr7:112145800-112146400	Enhancers	Fetal Intestine Small	intestine
14	chr7:112145800-112148000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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