Variant report

Variant	rs10226798
Chromosome Location	chr7:6739789-6739790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6728320..6732586-chr7:6737801..6740275,4	K562	blood:
2	chr7:6720927..6723913-chr7:6737715..6740062,2	K562	blood:

Variant related genes	Relation type
ENSG00000265245	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12673800	0.87[ASN][1000 genomes]
rs3801033	0.94[ASN][1000 genomes]
rs3801034	0.94[ASN][1000 genomes]
rs3801036	0.88[ASN][1000 genomes]
rs3801038	0.92[ASN][1000 genomes]
rs3801039	0.92[ASN][1000 genomes]
rs6974325	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
4	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6712400-6744000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:6718600-6742600	ZNF genes & repeats	Liver	Liver
3	chr7:6721400-6745200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:6721600-6740800	ZNF genes & repeats	Fetal Brain Female	brain
5	chr7:6721600-6743800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr7:6721600-6744600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:6721600-6745400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:6721800-6740800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr7:6721800-6744000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:6722200-6741400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr7:6722400-6745000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr7:6722600-6745000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:6723600-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:6723600-6745400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:6723800-6745000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:6724000-6744800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:6725000-6741800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:6725000-6744800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:6725800-6745000	ZNF genes & repeats	NH-A	brain
20	chr7:6726000-6740600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr7:6726000-6741400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr7:6726000-6741600	ZNF genes & repeats	Dnd41	blood
23	chr7:6726000-6742200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr7:6726000-6743600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
25	chr7:6726000-6744800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr7:6726000-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:6726000-6745000	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr7:6726000-6745200	ZNF genes & repeats	A549	lung
29	chr7:6726200-6739800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
30	chr7:6726200-6739800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
31	chr7:6726200-6742200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr7:6726200-6742200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr7:6726200-6743600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:6726200-6743600	ZNF genes & repeats	NHEK	skin
35	chr7:6726200-6743800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:6726200-6743800	ZNF genes & repeats	HMEC	breast
37	chr7:6726200-6745000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr7:6726200-6745000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr7:6726200-6745000	ZNF genes & repeats	Fetal Lung	lung
40	chr7:6726400-6740800	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr7:6726400-6743600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr7:6726400-6744800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr7:6726600-6741400	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr7:6726600-6745000	ZNF genes & repeats	GM12878-XiMat	blood
45	chr7:6726800-6742200	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr7:6727400-6740200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr7:6730200-6741600	Strong transcription	HepG2	liver
48	chr7:6730200-6742000	ZNF genes & repeats	Ovary	ovary
49	chr7:6730400-6744000	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr7:6730800-6745000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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