Variant report

Variant	rs10227131
Chromosome Location	chr7:101801630-101801631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101797921..101799517-chr7:101801166..101802707,2	K562	blood:
2	chr7:101797931..101799467-chr7:101801104..101802765,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10248171	0.94[ASN][1000 genomes]
rs1107462	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1107463	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1297620	0.94[ASN][1000 genomes]
rs16869536	1.00[JPT][hapmap]
rs17135072	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17135077	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201435	1.00[JPT][hapmap]
rs201436	1.00[JPT][hapmap]
rs201441	1.00[JPT][hapmap]
rs201442	1.00[JPT][hapmap]
rs201443	1.00[JPT][hapmap]
rs201445	1.00[JPT][hapmap]
rs201448	1.00[JPT][hapmap]
rs201449	1.00[JPT][hapmap]
rs201450	1.00[JPT][hapmap]
rs201454	1.00[JPT][hapmap]
rs201455	1.00[JPT][hapmap]
rs201456	1.00[JPT][hapmap]
rs201458	1.00[JPT][hapmap]
rs201459	1.00[JPT][hapmap]
rs201468	1.00[JPT][hapmap]
rs2268029	0.94[ASN][1000 genomes]
rs2268031	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268032	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28607250	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715132	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs382270	1.00[JPT][hapmap]
rs382934	1.00[JPT][hapmap]
rs386207	1.00[JPT][hapmap]
rs392606	0.94[ASN][1000 genomes]
rs395848	1.00[JPT][hapmap]
rs57242832	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57517296	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57634989	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58179454	0.87[EUR][1000 genomes]
rs59140055	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60345263	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60679727	0.87[EUR][1000 genomes]
rs60795390	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61170107	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61212564	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61232541	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61484374	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73408014	0.87[EUR][1000 genomes]
rs7788329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7800374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691705	0.94[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101782800-101803400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
8	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
9	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
10	chr7:101790800-101811800	Weak transcription	Osteobl	bone
11	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:101791000-101801800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
15	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:101796400-101802000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:101797000-101802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
21	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
22	chr7:101797200-101801800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:101797200-101801800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:101797200-101802000	Weak transcription	NH-A	brain
25	chr7:101797200-101803400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:101797200-101805200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:101797200-101806000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:101797200-101806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:101797200-101806200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:101797200-101807200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:101797200-101807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:101797200-101807600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:101797200-101808000	Weak transcription	NHLF	lung
34	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
36	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
37	chr7:101797200-101812800	Weak transcription	HSMM	muscle
38	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
39	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
44	chr7:101797400-101806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:101797400-101806800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:101797400-101807000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr7:101797400-101807200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr7:101797400-101809600	Weak transcription	HSMMtube	muscle
49	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:101797800-101852200	Weak transcription	NHEK	skin

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