Variant report
| Variant | rs10227769 |
|---|---|
| Chromosome Location | chr7:126870111-126870112 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126859803..126861412-chr7:126868321..126870477,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10226369 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10226675 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10234740 | 1.00[JPT][hapmap] |
| rs10241965 | 1.00[JPT][hapmap] |
| rs10243967 | 1.00[JPT][hapmap] |
| rs10261152 | 1.00[JPT][hapmap] |
| rs10273755 | 1.00[JPT][hapmap] |
| rs10280829 | 1.00[JPT][hapmap] |
| rs11563676 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1419388 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17863250 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17866103 | 1.00[CHB][hapmap] |
| rs17866743 | 1.00[JPT][hapmap] |
| rs17867127 | 1.00[CHB][hapmap] |
| rs17867800 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17869428 | 1.00[CHB][hapmap] |
| rs17869634 | 1.00[CHB][hapmap] |
| rs3779537 | 1.00[JPT][hapmap] |
| rs6947960 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6961760 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6961944 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7805944 | 1.00[JPT][hapmap] |
| rs7806263 | 1.00[CEU][hapmap] |
| rs7806403 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv1819919 | chr7:126850298-126888714 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
