Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112347421..112349959-chr7:112428528..112430366,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10232962	1.00[EUR][1000 genomes]
rs10241709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265199	1.00[EUR][1000 genomes]
rs10268162	1.00[EUR][1000 genomes]
rs10277252	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868588	1.00[EUR][1000 genomes]
rs2060636	1.00[EUR][1000 genomes]
rs28435304	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601694	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2905281	1.00[EUR][1000 genomes]
rs2905282	1.00[EUR][1000 genomes]
rs6964755	1.00[EUR][1000 genomes]
rs6965803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341402	1.00[EUR][1000 genomes]
rs73715667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73715677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73718119	1.00[EUR][1000 genomes]
rs73718130	1.00[EUR][1000 genomes]
rs7778342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112347000-112349000	Enhancers	Fetal Brain Male	brain
2	chr7:112347800-112348600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:112347800-112348800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:112348400-112348600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:112348400-112348600	Enhancers	Fetal Intestine Small	intestine
6	chr7:112348400-112348600	Enhancers	Small Intestine	intestine
7	chr7:112348400-112349000	Enhancers	Fetal Lung	lung
8	chr7:112348400-112349200	Enhancers	Brain Germinal Matrix	brain
9	chr7:112348400-112349200	Enhancers	Fetal Brain Female	brain

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