Variant report

Variant	rs10228432
Chromosome Location	chr7:39199053-39199054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39198600..39200599-chr7:39202951..39205373,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10234560	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10237781	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10244167	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10246046	0.83[EUR][1000 genomes]
rs10263259	0.85[CEU][hapmap];0.97[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs10275706	0.83[EUR][1000 genomes]
rs11768425	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11773046	0.83[GIH][hapmap]
rs12701697	0.90[CEU][hapmap]
rs13231075	0.90[CEU][hapmap]
rs1525799	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs17171537	0.89[MEX][hapmap]
rs2280667	0.90[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs34866559	0.80[EUR][1000 genomes]
rs35136533	0.84[EUR][1000 genomes]
rs35631433	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36052669	0.81[EUR][1000 genomes]
rs4323393	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4355688	0.90[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs4478468	0.85[CEU][hapmap];0.92[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs4537223	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4540324	0.90[CEU][hapmap]
rs4723824	0.90[CEU][hapmap]
rs4723825	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs4723828	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6952466	0.90[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs953874	0.90[CEU][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs9639812	0.90[CEU][hapmap];0.87[GIH][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2761126	chr7:39191290-39199053	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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