Variant report

Variant	rs10229164
Chromosome Location	chr7:137774651-137774652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:137774379-137774676	HepG2	liver:	n/a	n/a
2	EP300	chr7:137774254-137774741	HepG2	liver:	n/a	chr7:137774275-137774284 chr7:137774274-137774283 chr7:137774486-137774496
3	FOS	chr7:137774082-137774706	MCF10A-Er-Src	breast:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282
4	TBP	chr7:137774110-137774827	Hela-S3	cervix:	n/a	n/a
5	USF2	chr7:137774247-137774738	Hela-S3	cervix:	n/a	n/a
6	FOS	chr7:137774066-137774741	MCF10A-Er-Src	breast:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282
7	SMC3	chr7:137774113-137774899	Hela-S3	cervix:	n/a	n/a
8	RAD21	chr7:137774146-137774733	Hela-S3	cervix:	n/a	n/a
9	ARID3A	chr7:137774018-137774708	HepG2	liver:	n/a	n/a
10	CEBPB	chr7:137774166-137774676	K562	blood:	n/a	chr7:137774544-137774555
11	CEBPB	chr7:137774370-137774715	HepG2	liver:	n/a	chr7:137774544-137774555
12	FOXA1	chr7:137774116-137774764	HepG2	liver:	n/a	chr7:137774481-137774496 chr7:137774162-137774174 chr7:137774434-137774449
13	CHD2	chr7:137774186-137774813	Hela-S3	cervix:	n/a	n/a
14	STAT3	chr7:137774349-137774769	MCF10A-Er-Src	breast:	n/a	n/a
15	EP300	chr7:137774160-137774720	HepG2	liver:	n/a	chr7:137774161-137774171 chr7:137774275-137774284 chr7:137774274-137774283 chr7:137774486-137774496
16	FOS	chr7:137774082-137774725	MCF10A-Er-Src	breast:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282
17	NFIC	chr7:137774228-137774675	HepG2	liver:	n/a	n/a
18	JUND	chr7:137773956-137774771	Hela-S3	cervix:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282 chr7:137774273-137774284
19	MAFF	chr7:137774309-137774657	HepG2	liver:	n/a	n/a
20	RCOR1	chr7:137774456-137774719	HepG2	liver:	n/a	n/a
21	KAP1	chr7:137774132-137774661	U2OS	brain:	n/a	chr7:137774273-137774282
22	RFX5	chr7:137774111-137774734	Hela-S3	cervix:	n/a	n/a
23	FOXA2	chr7:137774242-137774660	A549	lung:	n/a	n/a
24	CEBPB	chr7:137774129-137774724	HepG2	liver:	n/a	chr7:137774544-137774555
25	BHLHE40	chr7:137774233-137774688	HepG2	liver:	n/a	n/a
26	CEBPD	chr7:137774374-137774675	HepG2	liver:	n/a	n/a
27	MAZ	chr7:137774256-137774668	Hela-S3	cervix:	n/a	chr7:137774274-137774283
28	BRCA1	chr7:137774292-137774671	Hela-S3	cervix:	n/a	n/a
29	FOXA1	chr7:137774066-137774796	HepG2	liver:	n/a	chr7:137774481-137774496 chr7:137774162-137774174 chr7:137774434-137774449
30	CEBPB	chr7:137773954-137774777	MCF-7	breast:	n/a	chr7:137774544-137774555
31	JUND	chr7:137774037-137774674	HepG2	liver:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282 chr7:137774273-137774284
32	MAX	chr7:137774237-137774770	HepG2	liver:	n/a	chr7:137774274-137774283
33	FOXA1	chr7:137774169-137774723	A549	lung:	n/a	chr7:137774481-137774496 chr7:137774434-137774449
34	CEBPB	chr7:137774042-137774815	Hela-S3	cervix:	n/a	chr7:137774544-137774555
35	FOXA2	chr7:137774089-137775082	HepG2	liver:	n/a	chr7:137774162-137774174
36	NR2F2	chr7:137773815-137774758	MCF-7	breast:	n/a	n/a
37	TEAD4	chr7:137773918-137774843	HepG2	liver:	n/a	n/a
38	JUND	chr7:137774386-137774667	HepG2	liver:	n/a	n/a
39	JUN	chr7:137774124-137774691	HepG2	liver:	n/a	chr7:137774545-137774558 chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282
40	CEBPB	chr7:137774013-137774807	MCF-7	breast:	n/a	chr7:137774544-137774555
41	JUND	chr7:137774026-137774739	HCT-116	colon:	n/a	chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282 chr7:137774273-137774284
42	MYC	chr7:137774206-137774699	MCF10A-Er-Src	breast:	n/a	chr7:137774274-137774283
43	RCOR1	chr7:137773989-137774823	Hela-S3	cervix:	n/a	n/a
44	FOXA1	chr7:137774324-137774770	HepG2	liver:	n/a	chr7:137774481-137774496 chr7:137774434-137774449
45	MYBL2	chr7:137773977-137774721	HepG2	liver:	n/a	n/a
46	MXI1	chr7:137774385-137774687	HepG2	liver:	n/a	n/a
47	CEBPB	chr7:137774088-137774759	HepG2	liver:	n/a	chr7:137774544-137774555
48	ARID3A	chr7:137774401-137774720	K562	blood:	n/a	n/a
49	FOXA1	chr7:137774207-137774694	A549	lung:	n/a	chr7:137774481-137774496 chr7:137774434-137774449
50	JUN	chr7:137774026-137774652	Hela-S3	cervix:	n/a	chr7:137774545-137774558 chr7:137774275-137774283 chr7:137774274-137774283 chr7:137774275-137774284 chr7:137774275-137774282

No.	Distal block	Cell Line	Cell type
1	chr7:137769402..137771015-chr7:137771922..137774982,3	MCF-7	breast:
2	chr7:137686258..137688306-chr7:137772925..137775024,2	MCF-7	breast:
3	chr7:137746837..137750836-chr7:137772601..137775949,4	MCF-7	breast:

Variant related genes	Relation type
RN7SKP223	TF binding region
AKR1D1	TF binding region
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10227099	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230440	1.00[AMR][1000 genomes]
rs10231078	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236488	1.00[AMR][1000 genomes]
rs10258807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260689	1.00[AMR][1000 genomes]
rs10263802	1.00[AMR][1000 genomes]
rs10264216	0.82[YRI][hapmap]
rs10264483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275029	0.96[AFR][1000 genomes]
rs10276854	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276951	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279265	1.00[AMR][1000 genomes]
rs17169511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547527	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799130	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137773600-137775200	Enhancers	HepG2	liver
2	chr7:137773600-137775600	Enhancers	Liver	Liver
3	chr7:137774200-137776400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:137774400-137774800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:137774400-137774800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:137774400-137774800	Flanking Active TSS	Hela-S3	cervix
7	chr7:137774600-137774800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links