Variant report

Variant	rs10229456
Chromosome Location	chr7:39213626-39213627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10234092	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10244776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252129	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10951597	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11773046	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs11972468	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12531437	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12531464	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12534084	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12536501	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs1525793	0.91[CEU][hapmap];0.89[YRI][hapmap]
rs17511572	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs2049496	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2091323	0.91[CEU][hapmap]
rs2392619	0.82[EUR][1000 genomes]
rs28459466	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs35489214	0.84[EUR][1000 genomes]
rs35792719	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3924710	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4262244	0.98[ASN][1000 genomes]
rs4279508	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs4401749	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4472423	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs4473925	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs4720311	0.85[YRI][hapmap];0.97[ASN][1000 genomes]
rs4720314	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4720315	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs56395837	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59249283	0.87[EUR][1000 genomes]
rs61003868	0.85[EUR][1000 genomes]
rs6462895	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6955619	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6955746	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6955924	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6975659	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73697515	0.85[EUR][1000 genomes]
rs7783839	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7783932	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7784092	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7787466	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7787601	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7788521	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7795617	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7802746	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806520	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs955591	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39213600-39215400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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