Variant report

Variant	rs10231075
Chromosome Location	chr7:101559302-101559303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101546835..101549246-chr7:101558183..101559730,2	MCF-7	breast:
2	chr7:101525862..101528715-chr7:101557017..101559763,2	MCF-7	breast:
3	chr7:101463126..101465910-chr7:101556638..101559361,3	K562	blood:
4	chr7:101542354..101543995-chr7:101557811..101560799,2	MCF-7	breast:
5	chr7:101557512..101560612-chr7:101577165..101580347,3	K562	blood:
6	chr7:101554624..101556999-chr7:101558630..101561050,2	MCF-7	breast:
7	chr7:101559121..101561175-chr7:101561181..101563047,2	MCF-7	breast:
8	chr7:101556089..101558949-chr7:101559230..101562198,4	K562	blood:
9	chr7:101463126..101464895-chr7:101557489..101559361,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10236615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10238938	0.82[ASN][1000 genomes]
rs10254769	0.82[ASN][1000 genomes]
rs10259603	1.00[JPT][hapmap]
rs10267777	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10276057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10488042	1.00[JPT][hapmap]
rs10488043	1.00[JPT][hapmap]
rs12533258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537526	1.00[JPT][hapmap]
rs17408612	1.00[JPT][hapmap]
rs17408640	1.00[JPT][hapmap]
rs17487076	1.00[JPT][hapmap]
rs17487672	1.00[JPT][hapmap]
rs202142	1.00[JPT][hapmap]
rs202147	1.00[JPT][hapmap]
rs202150	1.00[JPT][hapmap]
rs202152	1.00[JPT][hapmap]
rs2031085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2041008	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6465838	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6465839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6973312	1.00[JPT][hapmap]
rs7780631	1.00[JPT][hapmap]
rs7785266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7791278	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7796818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7796995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7805379	1.00[JPT][hapmap]
rs7810922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9969318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101530600-101559800	Weak transcription	GM12878-XiMat	blood
2	chr7:101544000-101569800	Weak transcription	HMEC	breast
3	chr7:101544200-101559400	Weak transcription	NHEK	skin
4	chr7:101544200-101579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:101548800-101559400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:101554800-101561400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:101555000-101560200	Weak transcription	Hela-S3	cervix
8	chr7:101555200-101559400	Weak transcription	Gastric	stomach
9	chr7:101555400-101565600	Weak transcription	Stomach Mucosa	stomach
10	chr7:101555400-101567400	Weak transcription	HUVEC	blood vessel
11	chr7:101555800-101559600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:101556000-101572600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:101556200-101559600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:101556400-101561200	Weak transcription	Fetal Kidney	kidney
15	chr7:101556400-101561400	Weak transcription	HSMM	muscle
16	chr7:101556400-101566800	Weak transcription	NHDF-Ad	bronchial
17	chr7:101556600-101559400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:101556800-101560600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:101557200-101559800	Weak transcription	A549	lung
20	chr7:101557200-101565600	Weak transcription	NH-A	brain
21	chr7:101557400-101559400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:101557400-101566000	Weak transcription	Aorta	Aorta
23	chr7:101557400-101566400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:101557400-101573600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:101557600-101559400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:101557600-101559400	Weak transcription	Colonic Mucosa	Colon
27	chr7:101557600-101559400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr7:101557600-101559800	Enhancers	Fetal Heart	heart
29	chr7:101557600-101565800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:101557600-101568200	Weak transcription	Brain Anterior Caudate	brain
31	chr7:101557600-101571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:101557800-101559400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:101557800-101559400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:101557800-101559400	Enhancers	Fetal Brain Male	brain
35	chr7:101557800-101559400	Enhancers	Right Ventricle	heart
36	chr7:101557800-101559600	Enhancers	Right Atrium	heart
37	chr7:101558000-101564600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:101558000-101565600	Strong transcription	Fetal Intestine Small	intestine
39	chr7:101558000-101567800	Strong transcription	Dnd41	blood
40	chr7:101558000-101570200	Strong transcription	Fetal Stomach	stomach
41	chr7:101558200-101559800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:101558200-101561600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:101558200-101561800	Genic enhancers	Fetal Thymus	thymus
44	chr7:101558200-101563000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:101558200-101563200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:101558200-101563200	Strong transcription	Primary T cells from cord blood	blood
47	chr7:101558200-101563400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:101558200-101563400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:101558200-101563400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:101558200-101563400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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