Variant report

Variant	rs10231078
Chromosome Location	chr7:137759245-137759246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10227099	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229164	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230284	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230440	1.00[AMR][1000 genomes]
rs10236488	1.00[AMR][1000 genomes]
rs10258807	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260689	1.00[AMR][1000 genomes]
rs10263802	1.00[AMR][1000 genomes]
rs10264216	0.82[YRI][hapmap]
rs10264483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275029	1.00[AFR][1000 genomes]
rs10276854	0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279265	1.00[AMR][1000 genomes]
rs17169511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587485	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799130	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv437032	chr7:137753091-137773291	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137757600-137759600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr7:137757800-137761200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr7:137758000-137760200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:137758600-137759800	Enhancers	HMEC	breast
5	chr7:137758600-137761200	ZNF genes & repeats	HepG2	liver
6	chr7:137758800-137759400	Enhancers	Hela-S3	cervix
7	chr7:137759000-137760600	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:137759200-137759600	Enhancers	NHEK	skin
9	chr7:137759200-137760600	ZNF genes & repeats	GM12878-XiMat	blood
10	chr7:137759200-137760800	Enhancers	Liver	Liver
11	chr7:137759200-137761400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:137759200-137762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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