Variant report

Variant	rs10231439
Chromosome Location	chr7:104557060-104557061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10245078	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10251106	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10276653	0.93[ASN][1000 genomes]
rs10953459	0.89[ASN][1000 genomes]
rs11978074	0.90[ASN][1000 genomes]
rs12333765	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2428161	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2891786	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730060	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59869531	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60551932	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6949656	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740068	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs7795893	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs886145	0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104549800-104558800	Strong transcription	Fetal Intestine Small	intestine
2	chr7:104550200-104558400	Strong transcription	Fetal Intestine Large	intestine
3	chr7:104552600-104563400	Weak transcription	Pancreas	Pancrea
4	chr7:104554600-104562800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:104555200-104563400	Weak transcription	Brain Substantia Nigra	brain
6	chr7:104555200-104563600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:104556000-104562600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:104556800-104558800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr7:104557000-104558200	Strong transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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